seandavi SRAdb issues - Githubissues

seandavi / SRAdb

Git mirror of Bioconductor SRAdb package

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issues

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Data is not fetched.

#38 Saeedjaanz opened 1 year ago
1
No URLs working, I could not download the metadata database

#37 Majid-Soheili opened 2 years ago
5
[Question] It seems that the SRAmetadb.sqlite file does not contain recent data

#36 kojix2 opened 3 years ago
0
Possible empty tables in the current SQLite file

#35 chappers2 opened 4 years ago
0
Session Stop (Error: Server aborted session: No such file or directory)

#34 bweiler89 opened 4 years ago
0
SRAdb not working(Error in if (is.na)

#33 avrajit opened 4 years ago
0
SRAdb not available for R version 4.0.1

#32 apc1992 opened 4 years ago
1
sqlite is outdates and is different between amazon and backup URL

#31 antonkulaga opened 4 years ago
1
issue listSRAfile

#30 AminChoukrallah opened 4 years ago
0
pathogen host data

#29 noahaus closed 4 years ago
6
getSRAdbFile Problem

#28 GanQiao1990 opened 4 years ago
2
Error in gregexpr("\\s", file_date1, perl = TRUE)[[1]] : subscript out of bounds

#27 lwaldron opened 4 years ago
0
Paired end fastq FTP incorrect

#26 OgnjenMilicevic opened 5 years ago
0
getSRAfile: argument is of length zero

#25 Npbs8691 closed 5 years ago
5
SRADb does not seems up to date

#24 dktanwar opened 5 years ago
0
listSRAfile() fails for SRX accessions

#23 RoganGrant opened 5 years ago
0
Update Frequency

#22 saketkc closed 5 years ago
1
getSRA() did not return all available study (SRP*/ERP*/DRP*) IDs

#21 parnika91 opened 5 years ago
1
Missing data

#20 ndaniel closed 5 years ago
1
Is it possible to generate the sqlite DB from scratch?

#19 audy opened 6 years ago
4
SRAdbFile does not exist

#18 iprada closed 6 years ago
1
Missing metadata

#17 wwood closed 6 years ago
5
getSRAfile can't open URL to download

#16 minwang90 closed 6 years ago
3
getSRAfile skip a file before completing downloading

#15 xinl22 closed 6 years ago
11
Swap retired `ByExp` paths to supported `ByRun`paths

#14 pkimes closed 7 years ago
1
getSRAfile: cannot open URL

#13 arnaudceol closed 6 years ago
0
getFASTQfile fails - no such table: sra

#12 ShixiangWang closed 7 years ago
4
No URLs working

#11 saketkc closed 7 years ago
26
getSRAdbFile() error, cannot download file

#10 jakeyeung closed 7 years ago
17
fastq table damaged -> fastq download broken

#9 ringprince opened 7 years ago
1
Paired fastq file download error

#8 nsarode opened 8 years ago
0
getSRAinfo() produces access denied error

#7 eavincent opened 8 years ago
0
getFASTQinfo fails - no such table: fastq

#6 bkamapantula closed 7 years ago
4
Switch to httr for downloads

#5 seandavi closed 7 years ago
2
Empty supplementary fields

#4 seandavi closed 7 years ago
1
install_github("seandavi/SRAdb")

#3 SharifiZarchi closed 10 years ago
1
getSRA, sqliteTableFields not found

#2 SharifiZarchi closed 10 years ago
0
Deal with rsqlite changes

#1 seandavi closed 10 years ago
0