seandavi / awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License
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Enhlink #301

Closed opoirion closed 2 months ago

opoirion commented 2 months ago

Add Enhlink for single-cell chromatin linkage analysis, recently published in Genome Biology Enhlink is a fast, easy to install, scalable, and robust computational approach that can infer linkages from high-dimensional, sparse, mono- or multi-omic single-cell datasets. Enhlink can be extended to infer distal, covariates, and clusters linkages. Compared to alternative methods such as Cicero, Archr, or Signac, Enhlink is more flexible, accurate and robust, and performs much faster. Enhlink can easily process data generated by the Cell Ranger pipelines, or any sparse matrices saved in the appropriate format