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[New Workshop] #2

Closed ChristopherEeles closed 2 years ago

ChristopherEeles commented 2 years ago

Please supply the following information:

Short title: Discovering Drug Synergy Biomarkers with PharmacoGx Workshop URL: https://github.com/bhklab/bioc2022workshop Workshop docker image: ghcr.io/bhklab/pgxBioc2022Workshop:latest Workshop port: 8787 Workshop memory request: 4 GB Workshop description: This workshop will introduce users to the CoreGx and PharmacoGx R packages, which are useful tools for pharmacogenomic modelling to discover biomarkers of treatment response in cancer model systems. PharmacoGx specifically focuses on drug sensitivity experiments in cancer cell lines, which will be the major focus of this workshop. Recent updates to PharmacoGx have added support for analyzing drug combination experiments to discover molecular biomarkers of drug synergy or antagonism. In this workshop users will learn how to use CoreGx and PharmacoGx to build a PharmacoSet object from cancer cell-lines with both their molecular phenotype and response to drug combination therapy characterized. This object will then be used to compute common metrics of drug synergy and antagonism and to use available molecular data to discover genes associated with response or resistance to both mono and drug combination therapies.

seandavi commented 2 years ago

Thanks, @ChristopherEeles. I saw the issue with the build and agree that it looks like a problem on the sysreqs side. Let me know when you get things built and I'll add.

seandavi commented 2 years ago

Noted the issue in #5 and also saw that the issue with sysreqs should be fixed. Try rerunning the action.

seandavi commented 2 years ago

Looks good, @ChristopherEeles. Added and tested launch and everything seems in place.