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seasoncloud / Alleloscope

Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
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Can not download #7

Closed silentFUSU closed 2 years ago

silentFUSU commented 2 years ago

Thanks for providing such an interesting tool. But I have some problem in downloading. The problem is like this.

devtools::install_github("seasoncloud/Alleloscope") Downloading GitHub repo seasoncloud/Alleloscope@HEAD Error in utils::download.file(url, path, method = method, quiet = quiet, : download from 'https://api.github.com/repos/seasoncloud/Alleloscope/tarball/HEAD' failed

seasoncloud commented 2 years ago

Hello,

Thanks for your interest in Alleloscope! I think github changed some setting recently. Could you try adding options(timeout=9999999) before running devtools::install_github("seasoncloud/Alleloscope") to see if it succeeds? So the code would be 

options(timeout=9999999)
devtools::install_github("seasoncloud/Alleloscope")
silentFUSU commented 2 years ago

!!!!That works, thank you very much for your answer!!!