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seasoncloud / Alleloscope

Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separately or in combination). Allele-specific estimation allows for the more accurate delineation of copy number states and the detection of subclonal copy-neutral loss-of-heterozygosity and mirrored CNA events. On scATAC-seq data, Alleloscope allows integrative multi-omic analysis of allele-specific copy number and chromatin accessibility for the same cell.
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hg19 centromere and telomere support #9

Open verne91 opened 1 year ago

verne91 commented 1 year ago

Can you provide centromere and telomere data for hg19? or the way to generate these data? Thanks!

seasoncloud commented 1 year ago

Hello!

Thanks for your interest in Alleloscope! I just uploaded the centromere and telomere data for hg19 to the "data" folder. The data were downloaded from the UCSC Table Browser (https://genome.ucsc.edu/cgi-bin/hgTables). You could either re-install the package or save the file separately to use. Hope this helps!