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seb-mueller / chlamy_locus_map

Small RNA Locus Map for Chlamydomonas reinhardtii
GNU General Public License v3.0
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Asking experimentalists for permission to publish data (plus asking about protocol) #1

Closed seb-mueller closed 5 years ago

seb-mueller commented 6 years ago

I've asked David about it, he agreed to chase up people. I'll get in touch with them!

nmatthews323 commented 6 years ago

Sounds great, thanks Seb, let me know if there's anything I can do.

nmatthews323 commented 6 years ago

Hi Seb, not sure where we're at with this? If we need to re-run segmentSeq we should ideally start that process in the next week or so, as it takes about seven days to run if I remember correctly

seb-mueller commented 6 years ago

Good point. Haven't heard back from Betty, but I'll ask Adrian again about Ago libraries. But I guess we can just use the already mapped data.

nmatthews323 commented 6 years ago

Great. What about Attila, Adrian and Daisy? Or have they been published?

If we're unsure about whether we're allowed to use data, we can always run the script twice in parallel with and without certain libraries. Although that's very inefficient!

nmatthews323 commented 6 years ago

For the external datasets, I had a look through and extracted their protocols: https://github.com/seb-mueller/chlamy_locus_map/blob/master/ExternalDatasets.csv We can possibly get Adrian to check whether these protocols are ok for inclusion with the internal datasets?