search

sebastian-gregoricchio / Rseb

An R-package for daily tasks required to handle biological data as well as avoid re-coding of small functions for quick but necessary data management.
https://sebastian-gregoricchio.github.io/Rseb/
GNU General Public License v3.0
0 stars 1 forks source link

computeMatrix with unscaled 5 prime or 3 prime regions #4

Open lishuai800 opened 1 month ago

lishuai800 commented 1 month ago

Hi Sebastian,

Thanks for this useful tool!

1) I would like to plot computeMatrix file with the parameter --unscaled5prime or --unscaled3prime. Is it possible to include this in the Rseb? 2) Although I did not use --unscaled5prime of computeMatrix in the scaled-regions mode, I could not have a right x axis(substitute the number with TES or End). Is there any parameter I could modify instead of modify them in Inkscape? error example: 3000 before and after gene, and gene body length is 5000. Chip-seq.ab3000.profile.pdf

Thank you very much!

Shuai

sebastian-gregoricchio commented 1 month ago

Hi Shuai!

Thank you for your interest in this Rseb.

For the first question, it should be feasible. However, in the meanwhile that I upload it, you can run the function without the unscaled5prime and ask to retrieve the command line. That you can run it locally and add the two extra options.

For the second question, the issue it is more complicated to solve, but I can try and work on it.

lishuai800 commented 1 month ago

Hi Sebastian,

Thanks for your reply. I am looking forward to the updates and will stick with the current command.