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sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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Don't put new line in fasta files #103

Closed sebhtml closed 11 years ago

sebhtml commented 11 years ago

GAGCTTTTATAAAGTTGACGGGGAATCCAAAGTATCATTAAGGAATAGTATTATATTTTT TACTTATGATAATGATGGAAATTACCAGTATTGGAATACACGAAGTATAGAAAAGAACCC

scaffold-2 CGGTACATGTCGGATAGTTGCATCTCTAACACTTGGTTTAAGATTTTGGCATCAATCGCC GTGATACCCATGTTAGCCGCTTCACGTAGTACACCGTTATGATCATCAAATAGGTGGTAC

There should not be a new line before >

sebhtml commented 11 years ago

code/plugin_Scaffolder/Scaffolder.cpp

sebhtml commented 11 years ago

the problem is that there are 2 new lines when a scaffold has a number of nucleotide that is a multiple of COLUMNS

Possibly impacts Contigs.fasta too

this is hard to reproduce

sebhtml commented 11 years ago

fcdde2165f4d50e7f0137c70ea9f929abc2af13d