What is the average coverage in scaffolds ? Maybe use the same used for seeds !

sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing

http://denovoassembler.sf.net

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Closed sebhtml closed 11 years ago

sebhtml commented 11 years ago

the code computes the mode, and then compute a mean without anything above REPEAT_MULTIPLIER*mode

this is roughly equivalent, but the new GraphPath framework is better

sebhtml commented 11 years ago

e3f97340b5a8f901bd879d8beb439cfb79ea7b3e