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sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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integer overflow with too many files (4288 files) #123

Closed sebhtml closed 11 years ago

sebhtml commented 11 years ago

FAIL Rank 5378 : partition is [1559137851544;1559427761891], 289910348 sequence reads

FAIL Rank 7027 : partition is [2033570633139;2033860026995], 289393857 sequence reads

PASS SRA056234-Picea-glauca-2012-12-18-2/FilePartition.txt

PASS SRA056234-Picea-glauca-2012-12-18-2/SequencePartition.txt

sebhtml commented 11 years ago

0 is fine

all other are not

0 : partition is [0;1039540], 1039541 sequence reads 1 : partition is [239401303;478802605], 239401303 sequence reads 2 : partition is [580380372;870570557], 290190186 sequence reads 3 : partition is [869621865;1159495819], 289873955 sequence reads 4 : partition is [1160806488;1451008109], 290201622 sequence reads 5 : partition is [1450628570;1740754283], 290125714 sequence reads 6 : partition is [1738223724;2027927677], 289703954 sequence reads 7 : partition is [2030406518;2320464591], 290058074 sequence reads 8 : partition is [2318370376;2608166672], 289796297 sequence reads 9 : partition is [2607389685;2897099649], 289709965 sequence reads 10 : partition is [2900825570;3190908126], 290082557 sequence reads 11 : partition is [3193488210;3483805319], 290317110 sequence reads 12 : partition is [3486116388;3776626086], 290509699 sequence reads 13 : partition is [3770558870;4060601859], 290042990 sequence reads 14 : partition is [4070257254;4360989914], 290732661 sequence reads

sebhtml commented 11 years ago

no problem with 588 files

sebhtml commented 11 years ago

The problem is in

void MachineHelper::call_RAY_MASTER_MODE_LOAD_SEQUENCES(){

only 1000 -1 files are sent.

sebhtml commented 11 years ago

d2289872695e122d8437bdd91e29bfe876f23a42