Filter automatically obvious false positives in "Ray Communities" using topology

sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing

http://denovoassembler.sf.net

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Filter automatically obvious false positives in "Ray Communities" using topology #133

Open sebhtml opened 11 years ago

sebhtml commented 11 years ago

Stakeholder: F. Raymond

sebhtml commented 11 years ago

dependency: #146

sebhtml commented 11 years ago

A good hit:

Odoribacter_splanchnicus_DSM_20712_uid63397 0gi|325278757|ref|NC_015160.1| Odoribacter splanchnicus DSM 20712 314392258 28994320.6601238 A bad hit: Desulfovibrio_aespoeensis_Aspo_2_uid42613 0gi|317151727|ref|NC_014844.1| Desulfovibrio aespoeensis Aspo-2 c 313629079 41600.00114632 For profiles, the raw proportion could be used to remove false positives.