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commented
11 years ago a29a38ba994a1292ef95370f9074769e2d23060b
with this patch:
with this patch:
Contigs >= 100 nt Number: 6797 Total length: 5456053 Average: 802 N50: 64462 Median: 112 Largest: 178727 Contigs >= 500 nt Number: 115 Total length: 4629548 Average: 40256 N50: 81932 Median: 26320 Largest: 178727 Scaffolds >= 100 nt Number: 6778 Total length: 5459598 Average: 805 N50: 87846 Median: 111 Largest: 225068 Scaffolds >= 500 nt Number: 97 Total length: 4633569 Average: 47768 N50: 96137 Median: 31271 Largest: 225068
5.4 Mb instead of 24 Mb. The remaining 8 Mb is due to super tips, which the next iteration will detect. to do: explore 10 on the left and 10 on the right.
/home/boisver1/MiSeq-big-kmer