Release Ray 2.3.0 !

[sebhtml]

[boisver1@cp1664-mp2 ray]$ cat Documentation/RELEASE_PROCEDURE.txt

• ­un regression tests (+backup on colosse) #199
• run unit tests #212
• test on Qin et al. 2010
• compile with make
• compile with cmake
• update release list (Ray & RayPlatform)
• check version in Makefile
• ./Ray -help > MANUAL_PAGE.txt
• git tag vx.y.z
• do a tar.bz2 (ShipProduct), compile it (make + make install) and test it
• upload the tarball on sf
• update the web site (download + manual)
• post an email on the list including changes (dump-changes)
• update the seqanswer thread
• Google+
• Twitter
• Facebook

[sebhtml]

Changes so far since v2.2.0:

[boisver1@cp1664-mp2 ray]$ git diff --stat v2.2.0..b3e6b07764f71318408de5fbe632a41ae29c2105 | tail -n1
 112 files changed, 6536 insertions(+), 538 deletions(-)

3bf06597ed21c6d72cf172884aa1708f37828347 fix a interger overflow for the Bloom filter
[boisver1@cp1664-mp2 ray]$ git log --pretty=oneline v2.2.0..b3e6b07764f71318408de5fbe632a41ae29c2105 | wc -l
98

[sebhtml]

need to close #195

[sebhtml]

updated website

http://denovoassembler.sourceforge.net/

mirror:

http://sebhtml.github.io/Ray.web/

[sebhtml]

mailing list:

http://permalink.gmane.org/gmane.science.biology.ray-genome-assembler/655

2.3.0

DONE !

[guyleonard]

I get this error on compilation of v2.3.0

RayPlatform/actors/Actor.cpp: In member function ‘void Actor::send(int, Message)’: RayPlatform/actors/Actor.cpp:54:52: error: ‘memcpy’ was not declared in this scope make[1]: ** [RayPlatform/actors/Actor.o] Error 1 make[1]: Leaving directory `/home/programs/Ray-2.3.0/RayPlatform' make: *\ [RayPlatform/libRayPlatform.a] Error 2

Machine is: Linux 3.2.0-53-generic #81-Ubuntu SMP x86_64 x86_64 x86_64 GNU/Linux

However, I can compile if I edit Actor.ccp to include "#include " Ray 2.2.0 compiles without issue. Standard compile as in Install.txt

But then I received another error - not sure if it is related - where Ray 2.2.0 assembles fine.

Rank 0 : VirtualCommunicator (service provided by VirtualCommunicator): 0 virtual messages generated 0 real messages (0%) Rank 0 freed 759169024 bytes from the path memory pool (chunks: 181) Fatal error in PMPI_Isend: Invalid rank, error stack: PMPI_Isend(148): MPI_Isend(buf=0x7fdc953b8b50, count=8, MPI_BYTE, dest=1, tag=224, MPI_COMM_WORLD, request=0x201be10) failed PMPI_Isend(95).: Invalid rank has value 1 but must be nonnegative and less than 1

Standard Ray command call: mpiexec -n 1 Ray \ -k \ 31 \ -i \ ../../data/illumina/unmodified/s_1_interleaved.fastq \ -o \ ray_k31_khmer_illumina \