Ray on HiSeq-2500-NA12878-demo-2x150 using mp2

[sebhtml]

corbeil-mp2.rqchp.ca

/mnt/lustre03/corbeil/corbeil_group/nne-790-ab/projects/human-genome

[sebhtml]

[boisver1@ip03-mp2 human-genome]$ cat job.sh 
#!/bin/bash
#PBS -N HiSeq-2500-NA12878-demo-2x150-1
#PBS -q qwork@mp2
#PBS -l nodes=22:ppn=1
#PBS -l walltime=2:00:00:00

module load openmpi_gcc64/1.6.4

mpiexec -n 512 \
ray/885e3010ccdb587e84b3d43f7a5e598b8f187c6f/Ray \
-k 31 \
-route-messages \
-detect-sequence-files HiSeq-2500-NA12878-demo-2x150 \
-o HiSeq-2500-NA12878-demo-2x150-1 \
[boisver1@ip03-mp2 human-genome]$ qsub job.sh 
37656.mp2.m

[sebhtml]

need to cd first:

[boisver1@ip03-mp2 human-genome]$ cat job.sh 
#!/bin/bash
#PBS -N HiSeq-2500-NA12878-demo-2x150-2
#PBS -q qwork@mp2
#PBS -l nodes=22:ppn=1
#PBS -l walltime=2:00:00:00

cd $PBS_O_WORKDIR

module load openmpi_gcc64/1.6.4

mpiexec -n 512 \
ray/885e3010ccdb587e84b3d43f7a5e598b8f187c6f/Ray \
-k 31 \
-route-messages \
-detect-sequence-files HiSeq-2500-NA12878-demo-2x150 \
-o HiSeq-2500-NA12878-demo-2x150-2 \
[boisver1@ip03-mp2 human-genome]$ qsub job.sh 
39183.mp2.m

[sebhtml]

PASS

http://dskernel.blogspot.ca/2013/10/the-polytope-router-and-human-genomes.html