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Ray -- Parallel genome assemblies for parallel DNA sequencing
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System tests for v2.3.0 (on colosse) #199

Closed sebhtml closed 10 years ago

sebhtml commented 10 years ago

$ hostname colosse2 $ pwd /home/sboisver12/git-clones/Ray-TestSuite/system-tests

Wed Sep 25 00:44:33 EDT 2013 Remaining jobs: 6

sebhtml commented 10 years ago 
    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

coli.Ray & 73 & 65 & 4604195 & 63071 & 114742 & 222309 & 0.9945 & 4 & 1 & 7 & 4 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

coli-interleaved.Ray & 72 & 64 & 4601826 & 63914 & 118479 & 222309 & 0.9940 & 5 & 2 & 7 & 4 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

ecoli-MiSeq.Ray & 83 & 78 & 4569732 & 55057 & 95817 & 269165 & 0.9813 & 1 & 1 & 23 & 6 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

L1-L3.Ray & 6 & 1 & 4642747 & 773791 & 1087569 & 1250603 & 1.0000 & 3 & 0 & 68 & 30 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

multiple-peaks.Ray & 5 & 4 & 881713 & 176342 & 614024 & 614024 & 0.9993 & 1 & 0 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

pg2.Ray & 6 & 6 & 871450 & 145241 & 612159 & 612159 & 0.9976 & 0 & 0 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

phix.Ray & 1 & 1 & 5386 & 5386 & 5386 & 5386 & 1.0000 & 0 & 0 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

pseudomonas-interleaved-bz2.Ray & 75 & 55 & 6231062 & 83080 & 233788 & 572438 & 0.9973 & 3 & 2 & 1 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

pseudomonas-p.Ray & 104 & 99 & 6220046 & 59808 & 248130 & 580140 & 0.9958 & 0 & 1 & 45 & 2 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

pseudomonas-p-bz2-gz.Ray & 103 & 99 & 6220255 & 60390 & 248130 & 580140 & 0.9958 & 0 & 1 & 45 & 2 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

pseudomonas-s.Ray & 1963 & 1963 & 6032764 & 3073 & 4704 & 29440 & 0.9627 & 1 & 0 & 1 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept.Ray & 105 & 97 & 2000809 & 19055 & 36431 & 128039 & 0.9846 & 0 & 1 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept-200.Ray & 104 & 96 & 2000310 & 19233 & 36431 & 128039 & 0.9843 & 0 & 1 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept-300.Ray & 71 & 61 & 2008075 & 28282 & 55479 & 182993 & 0.9839 & 0 & 0 & 1 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept-amos.Ray & 103 & 96 & 1999584 & 19413 & 36431 & 128039 & 0.9843 & 0 & 1 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept-bz2.Ray & 104 & 95 & 2000682 & 19237 & 36431 & 128039 & 0.9846 & 0 & 1 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept-interleaved.Ray & 103 & 95 & 1999972 & 19417 & 36431 & 128039 & 0.9843 & 0 & 1 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept-interleaved-bz2.Ray & 105 & 98 & 2001418 & 19061 & 36431 & 128039 & 0.9846 & 0 & 1 & 0 & 0 \

    %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels

strept-simulated-errors.Ray & 99 & 82 & 1997709 & 20178 & 37594 & 127936 & 0.9856 & 0 & 0 & 1 & 0 \

sebhtml commented 10 years ago

pseudomonas-s.Ray is buggy as usual #63

sebhtml commented 10 years ago

Aside from that' everything is great !