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sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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Ray on x86 seg fault: Address not mapped (Vertex::addRead) #223

Open sebhtml opened 10 years ago

sebhtml commented 10 years ago

Details:

http://permalink.gmane.org/gmane.science.biology.ray-genome-assembler/735

sebhtml commented 10 years ago

Maybe this one is related too:

http://permalink.gmane.org/gmane.science.biology.ray-genome-assembler/739

macmanes commented 10 years ago

to have all the info in one place:

The issue I am having is present in both 2.3.0 and 2.3.1. It seems to be related to something about Cray- Ray crashes every time on Cray at the same point, but runs just fine using same data and command on Stampede, which uses OpenMPI and 'normal' gcc compiler.

sebhtml commented 10 years ago

Thank you Matt.

https://www.mail-archive.com/denovoassembler-users@lists.sourceforge.net/msg00735.html

I will fix #218 and #222 then this one.

sebhtml commented 10 years ago

maybe this is related to checkpointing like in #222