Release 2.3.1

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• run system-tests (document in a github ticket)
• run unit-tests
• run robustness-tests
• compile with make
• compile with cmake
• update release list (Ray & RayPlatform)
• check version in Makefile
• ./Ray -help > MANUAL_PAGE.txt
• git tag vx.y.z
• do a tar.bz2 (ShipProduct), compile it (make + make install) and test it
• upload the tarball on sf
• update the web site (download + manual)
• post an email on the list including changes
• update the seqanswer thread
• Google+
• Twitter
• Facebook

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robustness:

[boisver1@cp0109-mp2 robustness-tests]$ bash main.sh Running test command-denovo-mini-ranks.sh PASS Running test command-denovo.sh PASS Running test fast.sh PASS Running test test-2-cores.sh PASS Running test test-mini-ranks-network-test.sh PASS Running test test-mini-ranks.sh PASS Running test test-routing.sh PASS Running test test.sh PASS == Robustness tests == PASS: 8 / 8 FAIL: 0 / 8

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unit tests.

Total.

PASS 3503 / 3503 FAIL 0 / 3503

error 0

Thank you, have a nice day. We hope you visit us again ! See main-2014-01-29-15-59-43-1727c861e403cff91d6cf8c3d03473ca19321265.txt [boisver1@cp2357-mp2 unit-tests]$ pwd /mnt/scratch_mp2/corbeil/boisver1/git-clones/Ray-TestSuite/unit-tests

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        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 coli.Ray & 72 & 65 & 4603278 & 63934 & 118479 &  222309 &  0.9942 & 4 & 2 & 7 & 4 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 coli-interleaved.Ray & 73 & 66 & 4613921 & 63204 & 114742 &  222309 &  0.9946 & 3 & 1 & 7 & 4 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 ecoli-MiSeq.Ray & 83 & 79 & 4570366 & 55064 & 95773 &  269165 &  0.9811 & 1 & 1 & 23 & 6 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 L1-L3.Ray & 10 & 3 & 3709395 & 370939 & 476193 &  1056071 &  0.7956 & 2 & 0 & 17 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 multiple-peaks.Ray & 5 & 4 & 881713 & 176342 & 614024 &  614024 &  0.9993 & 1 & 0 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 pg2.Ray & 6 & 6 & 871450 & 145241 & 612159 &  612159 &  0.9976 & 0 & 0 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 phix.Ray & 1 & 1 & 5386 & 5386 & 5386 &  5386 &  1.0000 & 0 & 0 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 pseudomonas-interleaved-bz2.Ray & 75 & 54 & 6231024 & 83080 & 233788 &  572438 &  0.9973 & 3 & 1 & 1 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 pseudomonas-p.Ray & 103 & 99 & 6220428 & 60392 & 248130 &  580140 &  0.9958 & 0 & 1 & 45 & 2 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 pseudomonas-p-bz2-gz.Ray & 104 & 99 & 6220160 & 59809 & 248130 &  580140 &  0.9956 & 0 & 1 & 45 & 2 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 pseudomonas-s.Ray & 1940 & 1940 & 6033347 & 3109 & 4847 &  29440 &  0.9629 & 1 & 0 & 1 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept.Ray & 104 & 97 & 2000478 & 19235 & 36431 &  128039 &  0.9844 & 0 & 1 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept-200.Ray & 105 & 97 & 2001384 & 19060 & 36431 &  128039 &  0.9846 & 0 & 1 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept-300.Ray & 71 & 60 & 2008187 & 28284 & 55479 &  182993 &  0.9840 & 0 & 0 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept-amos.Ray & 104 & 96 & 2000906 & 19239 & 36431 &  128039 &  0.9844 & 0 & 1 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept-bz2.Ray & 102 & 94 & 2000037 & 19608 & 36431 &  128039 &  0.9845 & 0 & 1 & 1 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept-interleaved.Ray & 104 & 96 & 1999617 & 19227 & 36431 &  128039 &  0.9843 & 0 & 1 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept-interleaved-bz2.Ray & 104 & 97 & 2000679 & 19237 & 36431 &  128039 &  0.9843 & 0 & 1 & 0 & 0 \\

        %  & numberOfContigs &scaffolds & bases & meanSize  & n50  & max   & coverage   & misassembledContigs & misassembledScaffolds & mismatches & indels
 strept-simulated-errors.Ray & 99 & 82 & 1997709 & 20178 & 37594 &  127936 &  0.9856 & 0 & 0 & 1 & 0 \\