I've a qsub-job with 2*6 metagenome-paired-end-files with these command:
mpiexec -n 156 Ray -k 31 -p MG1_R1.fastq MG1_R2.fastq -p MG2_R1.fastq MG2_R2.fastq -p MG3_R1.fastq MG3_R2.fastq -p MG4_R1.fastq MG4_R2.fastq -p MG5_R1.fastq MG5_R2.fastq -p MG6_R1.fastq MG6_R2.fastq -o assembly_ray
The problem is that I don't know if the assembly-process crashed or still runs.
Is there a way to show a more detailed documentation as in the ElapsedTime.txt?
My job is still at the step "Sequence loading" for 3 days. Is this normal? The files are very big (from 6 - 17 GB, sum 134 GB)
I've a qsub-job with 2*6 metagenome-paired-end-files with these command:
mpiexec -n 156 Ray -k 31 -p MG1_R1.fastq MG1_R2.fastq -p MG2_R1.fastq MG2_R2.fastq -p MG3_R1.fastq MG3_R2.fastq -p MG4_R1.fastq MG4_R2.fastq -p MG5_R1.fastq MG5_R2.fastq -p MG6_R1.fastq MG6_R2.fastq -o assembly_rayThe problem is that I don't know if the assembly-process crashed or still runs. Is there a way to show a more detailed documentation as in the ElapsedTime.txt? My job is still at the step "Sequence loading" for 3 days. Is this normal? The files are very big (from 6 - 17 GB, sum 134 GB)
I would be very grateful if everyone can help me.
Greetings, david