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Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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Ray Meta: What is the difference between scaffolds and contigs? #247

Open lfaller opened 7 years ago

lfaller commented 7 years ago

Looking at the OutputNumbers.txt file, it looks like I get the same numbers for scaffolds and contigs:

Contigs >= 100 nt
 Number: 455357
 Total length: 76317200
 Average: 167
 N50: 155
 Median: 146
 Largest: 21813
Contigs >= 500 nt
 Number: 4483
 Total length: 3882106
 Average: 865
 N50: 855
 Median: 680
 Largest: 21813
Scaffolds >= 100 nt
 Number: 455357
 Total length: 76317200
 Average: 167
 N50: 155
 Median: 146
 Largest: 21813
Scaffolds >= 500 nt
 Number: 4483
 Total length: 3882106
 Average: 865
 N50: 855
 Median: 680
 Largest: 21813

Thanks for any advice!