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sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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improve the scaffolding process #26

Closed sebhtml closed 13 years ago

sebhtml commented 13 years ago

77e4a01479289e35346f76a1bb3b42467289d8a8

sebhtml commented 13 years ago

Conflict (reverse) for contig 335000092 Length= 95108 Edge to be added: 335000092 F 398000164 F gap= 7193 priority= 27 Already added edge: 307000117 R 335000092 R gap= 21561 priority= 266

Scaffold # 2786 20 contigs 0 contig: 74000126 strand: F length: 3759 gap: 318 1 contig: 136000200 strand: R length: 4756 gap: 757 2 contig: 375000014 strand: R length: 34384 gap: 3121 3 contig: 58000040 strand: F length: 39000 gap: 6860 4 contig: 335000092 strand: F length: 95108 gap: 21561 5 contig: 307000117 strand: F length: 52045 gap: 1292 6 contig: 240000010 strand: R length: 13333 gap: 6604 7 contig: 236000056 strand: F length: 47707 gap: 1314 8 contig: 110000221 strand: F length: 15174 gap: 1541 9 contig: 292000228 strand: F length: 35505 gap: 3875 10 contig: 173000169 strand: R length: 36922 gap: 12571 11 contig: 357000158 strand: R length: 54914 gap: 10749 12 contig: 220000073 strand: F length: 28734 gap: 1655 13 contig: 251000108 strand: F length: 18744 gap: 451 14 contig: 281000038 strand: R length: 6197 gap: 501 15 contig: 297000041 strand: R length: 11405 gap: 466 16 contig: 357000214 strand: R length: 115348 gap: 10636 17 contig: 273000103 strand: R length: 19868 gap: 3810 18 contig: 323000079 strand: F length: 31042 gap: 2841 19 contig: 289000138 strand: R length: 33327

sebhtml commented 13 years ago

a90856719c1ffa348f0684549d61601255d419af