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sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
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Ray segfaults only guillimin for ERS006485 (Qin et al. Nature 2010) #45

Closed sebhtml closed 12 years ago

sebhtml commented 12 years ago

The same dataset is fine on at least 3 other resources.

ERS006485-Ray-2012-02-15-Gold

Rank 19 is calculating library lengths [13931/13971] Rank 19 is calculating library lengths [13941/13971] Rank 19 is calculating library lengths [13951/13971] Rank 19 is calculating library lengths [13961/13971]

Ray:26775 terminated with signal 11 at PC=4dcf30 SP=7fffc083ecf8. Backtrace: Ray(_ZNK14ReadAnnotation7getRankEv+0x0)[0x4dcf30] Ray(_ZN16MessageProcessor37call_RAY_MPI_TAG_REQUEST_VERTEX_READSEP7Message+0x117)[0x4c62c7] Ray(_ZN11ComputeCore15processMessagesEv+0x3a2)[0x537ec2] Ray(_ZN11ComputeCore10runVanillaEv+0x2e)[0x53801e] Ray(_ZN7Machine5startEv+0x2781)[0x44ceb1] Ray(main+0x3c)[0x446e3c] /lib64/libc.so.6(libc_start_main+0xf4)[0x3e9521d994] Ray(gxx_personality_v0+0x219)[0x446ce9]

sebhtml commented 12 years ago

guillimin> mpiexec -n 1 ./last-build/Ray -version Ray version 2.0.0-rc4 License for Ray: GNU General Public License version 3

RayPlatform version: 1.0.0-rc2 License for RayPlatform: GNU Lesser General Public License version 3

MAXKMERLENGTH: 32 KMER_U64_ARRAY_SIZE: 1 Maximum coverage depth stored by COVERAGE_TYPE: 4294967295 MAXIMUM_MESSAGE_SIZE_IN_BYTES: 4000 bytes FORCE_PACKING = n ASSERT = y HAVE_LIBZ = y HAVE_LIBBZ2 = n CONFIG_PROFILER_COLLECT = n CONFIG_CLOCK_GETTIME = n linux = y _MSC_VER = n GNUC = y RAY_32_BITS = n RAY_64_BITS = y

sebhtml commented 12 years ago

last-build -> 2b7314098ad77e07c652711f6dc6307f51eeb793

RayPlatform - 752757e11e2e292ee8644374a7732475becd427c

sebhtml commented 12 years ago

command:

GreenRay 31 ERS006485 36 ERS006485-Ray-2012-02-15-Gold

sebhtml commented 12 years ago

2f370607bfe48d6bc611165d5862b4569393e224