search

sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing
http://denovoassembler.sf.net
Other
65 stars 12 forks source link

Scaffolding for unpaired read #66

Closed plpla closed 12 years ago

plpla commented 12 years ago

When assembling unpaired reads, scaffolding is running...

sebhtml commented 12 years ago

This is similar to the issue

https://github.com/sebhtml/ray/issues/38

which was fixed by this commit:

https://github.com/sebhtml/ray/commit/162fdac039ea724402164999d77b845eb423b3d0

sebhtml commented 12 years ago

Modifications needed there -> https://github.com/sebhtml/ray/blob/master/code/plugin_Scaffolder/Scaffolder.cpp

plpla commented 12 years ago

Just made the change. You should make sure it's ok.

plpla commented 12 years ago

there: https://github.com/plpla/ray/blob/master/code/plugin_Scaffolder/Scaffolder.h https://github.com/plpla/ray/blob/master/code/plugin_Scaffolder/Scaffolder.cpp

plpla commented 12 years ago

Tests have been done after the changes. Seems to work fine!

sebhtml commented 12 years ago

I pulled your changes. Case closed.