profile Ray during the seed extension

sebhtml / ray

Ray -- Parallel genome assemblies for parallel DNA sequencing

http://denovoassembler.sf.net

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Closed sebhtml closed 11 years ago

sebhtml commented 12 years ago

Resource: mp2 Sample: SRA000271 options: -run-profiler -with-profiler-details

sebhtml commented 11 years ago

run this once the #91 is solved.

sebhtml commented 11 years ago

Buggy speeds are not observed with the Torus interconnect in RayPlatform.

This is strange.

sebhtml commented 11 years ago

Possibly just skip any seed whose length is lower than the minimum insert size / 2 With this, a lot of crap will be skipped hopefully.

sebhtml commented 11 years ago