Issues with the reference genome update（hg19 to hg38）

secastel / phaser

phasing and Allele Specific Expression from RNA-seq

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Issues with the reference genome update（hg19 to hg38） #43

Closed clsteam closed 6 years ago

clsteam commented 6 years ago

Considering that the reference genome has been updated, now I want to use the hg38 reference genome for analysis, may I ask that can this tool be transplanted to hg38 ? If so, I notice that you only provide files related to hg19 (such as 'Useful files' : hg19_hla.bed.gz and hg19_haplo_count_blacklist.bed.gz), could you please update these files to hg38 .

secastel commented 6 years ago

Thank you for pointing this out. I have added the appropriate hg38 annotations to each of the readme pages.