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secastel / phaser

phasing and Allele Specific Expression from RNA-seq
GNU General Public License v3.0
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phaser_cis_var.py #83

Closed Yang-Yingshan closed 4 months ago

Yang-Yingshan commented 4 months ago

Hello, thank you very much for providing such a good tool. I hope you can answer some mistakes in the process of using it. When using this phaser_cis_var.py script, you get an ERROR: ERROR: no phASER data read from input... check that chromsome naming is correct.. I am sure I am using input in bed.gz format. When I look at the script content, I find that when I change line 80 to change 1 to 3, it will run，I wonder if this will affect the result.

secastel commented 4 months ago

Hi there. Indeed this seems to be a bug and not quite sure how it wasn't identified before... I have pushed a change to fix the issue. I hope this solves the issue.