I've recently added logging support to the package. This has been a useful improvement, but it has introduced a couple of problems:
Prompts for user input get buried in log messages.
Console output gets very cluttered for programs like align_guidescope that are running subprocesses, since those subprocesses also generate log messages and it's hard to tell them apart.
Do the following:
[ ] Suppress stdio/stderr output to the console for subprocesses. Rely entirely on the log files for these processes.
[ ] Figure out how to avoid burying prompts in log messages.
I've recently added logging support to the package. This has been a useful improvement, but it has introduced a couple of problems:
align_guidescopethat are running subprocesses, since those subprocesses also generate log messages and it's hard to tell them apart.Do the following: