Open pconesa opened 2 months ago
Yeah, TRS currently has a hard-coded enum of acceptable workflow types: https://github.com/ga4gh/tool-registry-service-schemas/blob/develop/openapi/openapi.yaml#L730-L740
Although there is an open issue about how to extend this: https://github.com/ga4gh/tool-registry-service-schemas/issues/215
You might be able to do what you want with the regular Git API: https://workflowhub.eu/workflows/599/git/2/download/workflow_ceitec_layer1.json.template
where 599
is your workflow ID, 2
is the version number, and workflow_ceitec_layer1.json.template
is the file path to download.
Thanks, how can I get the list of files for 599 entry without knowing them?
There's a "tree" endpoint also:
curl -H "Accept: application/json" https://workflowhub.eu/workflows/599/git/2/tree
(documentation for these endpoints coming soon™️)
Thanks, got it! I think I can reach the files this way. Justfor you yo know.... our plan is for Scipion "python workflow engine" list workflows from workflowhub of type Scipion.
Currently, I think it is not possible to filter by Type "Scipion"?
I managed to filter by organization. So far if fine, we will use :
https://workflowhub.eu/ga4gh/trs/v2/tools?organization=Scipion CNB
Then we'll use the git endpoint to get the file we want
You can get a JSON response from the regular index page (with any filters etc. applied):
curl -H "Accept: application/json" https://workflowhub.eu/workflows?filter%5Bworkflow_type%5D=scipion
Hi, I'm trying to use the API to get the files described by entry 599 or other similar ones.
When requesting https://workflowhub.eu/ga4gh/trs/v2/tools/599/versions
I'm not getting the type:
Which is needed by the API to get the files later as described in the documentation:
/tools/{id}/versions/{version_id}/{type}/files
Is this the way to get the files when workflow type is Scipion or other than : GALAXY CWL ... (seems to be a short list of valid ones?)