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segalab / SGVFinder

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database #33

Open sxg1027 opened 8 months ago

sxg1027 commented 8 months ago

Hello, when I use metagenomic data from ruminant to generate jsdel files, most of the files only have "{}", which is empty. Can this be a database issue, as I know SGVFinder's default database should be targeted towards humans. Can I establish my own database and how to do it. Or perhaps this problem is caused by other reasons.

talkorem commented 8 months ago

Hi, this could be either an issue with depth, fraction of host reads, or database. You can check for the first two, and SGVFinder2 has a method for database creation.

sxg1027 commented 8 months ago

Hi, this could be either an issue with depth, fraction of host reads, or database. You can check for the first two, and SGVFinder2 has a method for database creation.

hi, thanks for your reply, I will check for the first two. If there are any new questions, I will consult with you again