Closed sshort325 closed 2 years ago
I keep getting this issue and I'm not sure how to fix it.
so you need to have only one line with GUROBI_COMETS_HOME in the file
Comment? Oh okay, I think I have a few so I just want the new one
Yup
Got it that time
Great, does cometspy work now?
Im not sure this is what I get when I do the first part of "Loading the COMETS Python Toolbox"
This is a problem with cobra now. You need to install it properly. Do it on anaconda shell $ pip install cobra
Where do I find the anaconda shell?
You can actually do it in a regular terminal.
Follow the instructions in cobrapy. https://opencobra.github.io/cobrapy/
This is what I get after following the pip install cobra
And i get the same in my python
Hm, not sure. Look at this discussion: https://groups.google.com/g/cobra-pie/c/G4b1bFwmkSk
I found out it's because "Cobra.test" has been deprecated for the newer "load_model", so it is fixed for me now. Thank you so much for all your help! I really appreciate it!
Great, so comets is running now?
I did the "import cometspy as c" and it works just fine. It just let me know that I haven't used it yet.
Great, have fun with it. Can you tell me who you are, what university and what you will be using it for? Thx.
Yes. My name is Samantha Short, for Carroll College in Montana. Maize Microbiome Modeling Project: Predict bacterial metabolic and growth responses (individually and in the community) to different nutrient sources, which I thought would be really interesting to explore with COMETS and to see how spatiotemporal dynamics plays a role.
That's fantastic. Please contact me if you need any additional help with comets. I will close this issue now, if that's fine with you.
Yes, thank you again for all your help! I will reach out if I have any other issues.