This should proably have been separated into two PR, but anyway.
1) Improved modelling of light
Parameters related to light uptake are now read in from the model file. These parameters are:
Surface area to biomass dry weight ratio
Absorption coefficients. Note that there is still some work needed to refine the absorption coefficients.
2) Fixing bug in FBACell.
When specific Vmax, Km, or now light conditions are set for specific exchange reactions in the model the order of the exchange reactions makes a difference. This was not accounted for previously and this led to incorrect matching of reactions and coefficients (Vmax, Km, light)
This should proably have been separated into two PR, but anyway.
1) Improved modelling of light Parameters related to light uptake are now read in from the model file. These parameters are:
2) Fixing bug in FBACell. When specific Vmax, Km, or now light conditions are set for specific exchange reactions in the model the order of the exchange reactions makes a difference. This was not accounted for previously and this led to incorrect matching of reactions and coefficients (Vmax, Km, light)