FastQC metrics missing from RDS and multiqc folder

seiboldlab / virprof

Pipeline for recovering and quantifying non-host genomes from RNA-seq

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FastQC metrics missing from RDS and multiqc folder #66

Open epruesse opened 2 months ago

epruesse commented 2 months ago

reported by @bethsecor

epruesse commented 2 months ago

It appears that the multiqc_fastqc.txt file that we have been using is no longer generated by MultiQC. Instead, it generates a gigantic JSON file that holds all the data. It'll be easier to parse, but it means I have to rewrite the part in the RDS generation that creates the QC tables.