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selkamand / ggoncoplot

Easily Create Interactive Oncoplots
https://selkamand.github.io/ggoncoplot/
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Add automatic SO consequence ranking for & separated SO terms #70

Closed selkamand closed 1 year ago

selkamand commented 1 year ago

Currently if there are & separated multi consequences - it throws off multi-hit palette.

We should automatically run:

mutationtypes::select_most_severe_consequence_so(consequence)) on these samples to simplify the consequence field before plotting

selkamand commented 1 year ago

Actually can't do this from palette function where mutation type is classified. If SO, type, we should check for '&' characters, and if we find any throw an error - telling the user to run mutationtypes::select_most_severe_consequence_so(consequence)) on the consequence types before use.

Alternatively we must rework function structure, and test type in main function - then we can edit the data itself.

Lets start by throwing the appropriate error, but can revisit if this proves annoying