Update the BIDS-like saving to align with template directory

[ibevers]

This pull request updates the BIDS-like structure of the output directory to more closely follow BIDS. It also adds tests and optimizes performance. Some of the changes included in this PR:

• Adds descriptions for each field to help users of the dataset understand it better.

• Adds an n_cores parameter that determines the number of processes to use when extracting features. When using Pydra, this is also the number of separate model instances that will be created.

• Adds tests for the conversion code.

• Adds transcriptions to the features saved with the option to use different Whisper model sizes.

• Adds a with_sensitive parameter that determines whether to include raw audio files and transcriptions in the output.

• Adds a template BIDS-like directory structure.

• [x] Configure to automatically update CHANGES.md

• [x] Remove references to summer school

Ensure all these are constructed or copied to the bids-like dataset saving directory with correct names:

• [x] CHANGES.md
• [x] README.md
• [x] dataset_description.json
• [x] participants.json
• [x] participants.tsv
• [x] phenotype
• [x] .json
• [x] .tsv
• [x] sub-
• [x] ses-
• [x] beh
• [x] audio
• [x] sub-_ses-_task-_audio.wav
• [x] sub-_ses-_task-_features.pt
• [x] sub-_ses-_task-_metadata.json
• [x] sub-_ses-_task-_transcript.txt
• [x] sessions.tsv

[ibevers]

dataset_description.json based on: https://github.com/bids-standard/bids-examples/blob/master/ds052/dataset_description.json https://bids-specification.readthedocs.io/en/stable/glossary.html#dataset_description-files

[ibevers]

Need to move all questionnaires in beh to phenotype. We don't have any behavioral experiments in the dataset. Therefore, we should not have a beh dir.

[ibevers]

There should be no beh directory.

• [x] Move all audio related jsons in beh to audio
• [x] Remove beh directory

[ibevers]

• [x] Merge save features separately into this branch
• [x] Get feature extraction working again

[ibevers]

• [x] Figure out workable explainable approach to json files

[ibevers]

• [x] Add flag for not including audios or otherwise make this clear

[ibevers]

Hi @alistairewj, thank you for reviewing! I didn't realize that about reformatting code and making changes in the same PR. In the future, will do my best to separate them🌱

To-dos:

• [x] add senselab>=0.12.0 to requirements
• [x] move audio data out of src

[ibevers]

• [x] Add license text dataset_description.json