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seoanezonjic / ExpHunterSuite

RNA-seq gene expression analysis suite
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Error in plot.window(...) #51

Closed Luiky1 closed 2 years ago

Luiky1 commented 2 years ago

I launched ExpHunterSuite v3.14 using the following command:

degenes_Hunter.R -m DE -f 2 -c 2 -t metadata.txt -i matrix.txt -o hunter_expression

And i got the following error:

Warning: The closing backticks on line 542 ("````") in file234bb7e86cb3f.md do not match the opening backticks "```" on line 520. You are recommended to fix either the opening or closing delimiter of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote).

processing file: main_report.Rmd
Warning: The closing backticks on line 541 ("````") in main_report.Rmd do not match the opening backticks "```" on line 519. You are recommended to fix either the opening or closing delimiter of the code chunk to use exactly the same numbers of backticks and same level of indentation (or blockquote).
Quitting from lines 273-276 (main_report.Rmd) 
Error in plot.window(...) : need finite 'xlim' values
Calls: write_expression_report ... eval -> plot -> plot.default -> localWindow -> plot.window
Execution halted

Metadata file, expression matrix and error log are attached. Thanks in advance.

hunter.zip

jimrperkins commented 2 years ago

This should be fixed now. There was an issue with the function producing a plot of genes that show high variance in terms of fold change. Let me know if you have any further issues.