search

seppinho / haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
https://haplogrep.i-med.ac.at/
MIT License
74 stars 23 forks source link

Bug on running haplogrep on windows #24

Closed elffuos closed 5 years ago

elffuos commented 5 years ago

Start Classification... Exception in thread "main" java.lang.UnsatisfiedLinkError: C:\Users\Desktop\mtDNA\jbwa-0.7.17\libbwajni.so: %1 is not a valid Win32 application at java.lang.ClassLoader$NativeLibrary.load(Native Method) at java.lang.ClassLoader.loadLibrary0(Unknown Source) at java.lang.ClassLoader.loadLibrary(Unknown Source) at java.lang.Runtime.load0(Unknown Source) at java.lang.System.load(Unknown Source) at importer.FastaImporter.load(FastaImporter.java:65) at genepi.haplogrep.main.Haplogrep.run(Haplogrep.java:151) at genepi.base.Tool.start(Tool.java:193) at genepi.haplogrep.main.Haplogrep.main(Haplogrep.java:197)

seppinho commented 5 years ago

Not sure if there is a windows library for jbwa. Currently alignment only works in Unix and MacOS. See here: https://github.com/lindenb/jbwa/pull/5

seppinho commented 5 years ago

closing this issue for now. fasta currently only supported for linux and mac.