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seppinho / haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
https://haplogrep.i-med.ac.at/
MIT License
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Quality ∞% ? #37

Open Alessio0796 opened 3 years ago

Alessio0796 commented 3 years ago

Some of my samples show a quality of "∞%". What does it mean?

haansi commented 3 years ago

Dear Alessio,

Can you post or send me the input samples profile? Could be related to heteroplasmic variants issue or related to the samples input range. Is it microarray data?

Alessio0796 commented 3 years ago

Hi, Thank you for the answer! Can I send you the input samples via e-mail? They're in .fasta format. Talking about samples, Haplogrep notices me errors and warnings such as "Heteroplasmic positions", "ambigous results" and something like that. I performed (on mitochondrial DNA) PCR, ExoSAP and bigdye before sequencing with 3500 analyzer. I thank you so much for the interest!

haansi commented 3 years ago

Ciao Alessio - of course, here's my address - hansi.weissensteiner@i-med.ac.at

seppinho commented 3 years ago

Is this issue still open?