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seppinho / haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.
https://haplogrep.i-med.ac.at/
MIT License
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Error - cannot find input file haplogrep 2.1.8 #5

Closed jayaramanp closed 6 years ago

jayaramanp commented 6 years ago

Hello,

i tried the haplogrep 2.1.8 jar file. It seems to talk about a missing input file even when nothing is specified. 

 java -jar /nfs/DGD/Research/MitoPanelresearch/tools/haplogrep/haplogrep-2.1.8.jar --lineage --format vcf --in M000000000_NA12878-MITO-1_MITO_S27.freebayeswithploidy_header_SBfiltered_reannoFORMAT.decomposed.normalized.vcf --phylotree 17

Welcome to HaploGrep 2.1.8 Division of Genetic Epidemiology, Medical University of Innsbruck

Error. Please check if input file exists

 java -jar /nfs/DGD/Research/MitoPanelresearch/tools/haplogrep/haplogrep-2.1.8.jar

Welcome to HaploGrep 2.1.8 Division of Genetic Epidemiology, Medical University of Innsbruck

Error. Please check if input file exists

 java -jar /nfs/DGD/Research/MitoPanelresearch/tools/haplogrep/haplogrep-2.1.8.jar --help

Welcome to HaploGrep 2.1.8 Division of Genetic Epidemiology, Medical University of Innsbruck

Error. Please check if input file exists

 java -jar /nfs/DGD/Research/MitoPanelresearch/tools/haplogrep/haplogrep-2.1.8.jar -h

Welcome to HaploGrep 2.1.8 Division of Genetic Epidemiology, Medical University of Innsbruck

Error. Please check if input file exists