Annotate FASTA file - Githubissues

seppinho / haplogrep-cmd

HaploGrep - mtDNA haplogroup classification. Supporting rCRS and RSRS.

https://haplogrep.i-med.ac.at/

MIT License

74 stars 23 forks source link

Closed nuin closed 6 years ago

nuin commented 6 years ago

We know that web Haplogrep can annotate genomes in a FASTA file. Is it possible to do the same on the command line version?

Thanks

seppinho commented 6 years ago

Hi Paolo, adding the --extend-report parameter should add the required information to the output. best

nuin commented 6 years ago

But can I use a FASTa file as input? It asks me for hsd or vcf files.

Thanks again

seppinho commented 6 years ago

sorry my bad. thats an open issue. see #3

nuin commented 6 years ago

OK, thanks. I will close this one and follow #3