Hi! Thanks for developing this plugin. We are using it in nf-core/phaseimpute.
Recently, we found a difference in behavior between different versions of Nextflow and nft-vcf when submitting a PR.
Interesting. Does this issue still persist? phasedAutodetect only checks if the first line is phased or not, with the default value being true. Do you have a test file I could use to investigate this further?
Hi! Thanks for developing this plugin. We are using it in nf-core/phaseimpute. Recently, we found a difference in behavior between different versions of Nextflow and nft-vcf when submitting a PR.
Nextflow Version:
latest-everything (24.07.0-edge)
Successful Run Log
Nextflow Version:
24.04.4
Failed Run Log
The failure occurs in the following part of the log:
When using Nextflow version
24.04.4
, there is a difference wherephasedAutodetect
is set tofalse
instead oftrue
.