sepsis-omics tutorials issues

sepsis-omics / tutorials

Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks

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Update tutorial - SAM/BAM count matrix tool no longer available on Galaxy

#45 mmelendrez opened 6 years ago
0
Simon edits long reads

#44 Slugger70 closed 6 years ago
0
Update to X!Tandem tutorial and links

#43 xychua closed 6 years ago
0
Synchronise

#42 mthang closed 6 years ago
0
Gubbins module - create

#41 AnnaSyme opened 6 years ago
0
Roary (Galaxy) module: need newick output

#40 AnnaSyme opened 6 years ago
0
Nullabor module: create?

#39 AnnaSyme opened 6 years ago
1
seqtk module: create

#38 AnnaSyme opened 6 years ago
0
Snippy module: need additional outfile.

#37 AnnaSyme opened 6 years ago
0
Trimmomatic module: add

#36 AnnaSyme opened 6 years ago
1
Pear tutorial log outfile

#35 AnnaSyme opened 6 years ago
0
Top menu tabs disappear in small windows

#34 AnnaSyme opened 6 years ago
0
Make headings 2 and 3 bolder

#33 AnnaSyme opened 7 years ago
1
Can't scroll down menus from top tabs

#32 AnnaSyme closed 7 years ago
1
Update mkdocs theme and template variables.

#31 AnnaSyme opened 7 years ago
0
Test X!Tandem tutorial.

#30 AnnaSyme closed 6 years ago
1
SMRT portal assembly settings - test

#29 AnnaSyme opened 7 years ago
0
add more authors to README

#28 AnnaSyme closed 7 years ago
0
add Pathway Tools tutorial for PGDB creation

#27 xychua closed 7 years ago
0
Genomics Workshop - provide overview page

#26 AnnaSyme closed 7 years ago
1
Fix top panel heading bar

#25 AnnaSyme closed 7 years ago
1
Obtain metabolomics tutorials

#24 AnnaSyme closed 6 years ago
2
Better explain datasets required for each module

#23 AnnaSyme closed 7 years ago
1
Fix typo in cmdline assembly module.

#22 AnnaSyme closed 7 years ago
1
Add link to more detailed Galaxy introduction tutorial.

#21 AnnaSyme opened 7 years ago
0
Write Salmon tutorial for DGE

#20 AnnaSyme closed 7 years ago
1
Add in challenge sections to various tutorials

#19 AnnaSyme opened 7 years ago
0
Add in FastQC tutorial

#18 AnnaSyme opened 7 years ago
1
Add in the extra component to the Velvet tutorial

#17 AnnaSyme closed 7 years ago
1
Add in module on accessing public data (incl. assembly, annotation)

#16 AnnaSyme closed 7 years ago
1
Ensure Pilon works on main mGVL (not only ABRPI)

#15 AnnaSyme closed 7 years ago
1
Add additional authors on readme page

#14 AnnaSyme closed 7 years ago
2
replace "fa" with emboss infoseq tool

#13 AnnaSyme closed 7 years ago
1
Protein Identification Tutorial

#12 xychua closed 7 years ago
1
Import from URL instructions dont work

#11 tseemann closed 7 years ago
8
Importing a history - need a file in there first?

#10 AnnaSyme closed 8 years ago
1
Add screenshot for importing data

#9 tseemann closed 8 years ago
2
Replace ../foo/index.md with /modules/foo/index.md

#8 tseemann closed 7 years ago
1
Make the icons macros

#7 tseemann opened 8 years ago
0
Make light green and black styles

#6 tseemann opened 8 years ago
0
history icon is an eye icon

#5 tseemann closed 7 years ago
1
Prokka tutorial - add section on JBrowse

#4 AnnaSyme closed 8 years ago
0
Save histories for various tutorials

#3 AnnaSyme closed 8 years ago
1
Update tutorials with new reference genome files?

#2 AnnaSyme closed 8 years ago
1
FastQC needs screenshots

#1 AnnaSyme opened 8 years ago
2