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sepsis-omics
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tutorials
Tutorials on how to use the microGVL to do common bacterial bioinformatic tasks
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Update tutorial - SAM/BAM count matrix tool no longer available on Galaxy
#45
mmelendrez
opened
6 years ago
0
Simon edits long reads
#44
Slugger70
closed
6 years ago
0
Update to X!Tandem tutorial and links
#43
xychua
closed
6 years ago
0
Synchronise
#42
mthang
closed
6 years ago
0
Gubbins module - create
#41
AnnaSyme
opened
6 years ago
0
Roary (Galaxy) module: need newick output
#40
AnnaSyme
opened
6 years ago
0
Nullabor module: create?
#39
AnnaSyme
opened
6 years ago
1
seqtk module: create
#38
AnnaSyme
opened
6 years ago
0
Snippy module: need additional outfile.
#37
AnnaSyme
opened
6 years ago
0
Trimmomatic module: add
#36
AnnaSyme
opened
6 years ago
1
Pear tutorial log outfile
#35
AnnaSyme
opened
6 years ago
0
Top menu tabs disappear in small windows
#34
AnnaSyme
opened
6 years ago
0
Make headings 2 and 3 bolder
#33
AnnaSyme
opened
7 years ago
1
Can't scroll down menus from top tabs
#32
AnnaSyme
closed
7 years ago
1
Update mkdocs theme and template variables.
#31
AnnaSyme
opened
7 years ago
0
Test X!Tandem tutorial.
#30
AnnaSyme
closed
6 years ago
1
SMRT portal assembly settings - test
#29
AnnaSyme
opened
7 years ago
0
add more authors to README
#28
AnnaSyme
closed
7 years ago
0
add Pathway Tools tutorial for PGDB creation
#27
xychua
closed
7 years ago
0
Genomics Workshop - provide overview page
#26
AnnaSyme
closed
7 years ago
1
Fix top panel heading bar
#25
AnnaSyme
closed
7 years ago
1
Obtain metabolomics tutorials
#24
AnnaSyme
closed
6 years ago
2
Better explain datasets required for each module
#23
AnnaSyme
closed
7 years ago
1
Fix typo in cmdline assembly module.
#22
AnnaSyme
closed
7 years ago
1
Add link to more detailed Galaxy introduction tutorial.
#21
AnnaSyme
opened
7 years ago
0
Write Salmon tutorial for DGE
#20
AnnaSyme
closed
7 years ago
1
Add in challenge sections to various tutorials
#19
AnnaSyme
opened
7 years ago
0
Add in FastQC tutorial
#18
AnnaSyme
opened
7 years ago
1
Add in the extra component to the Velvet tutorial
#17
AnnaSyme
closed
7 years ago
1
Add in module on accessing public data (incl. assembly, annotation)
#16
AnnaSyme
closed
7 years ago
1
Ensure Pilon works on main mGVL (not only ABRPI)
#15
AnnaSyme
closed
7 years ago
1
Add additional authors on readme page
#14
AnnaSyme
closed
7 years ago
2
replace "fa" with emboss infoseq tool
#13
AnnaSyme
closed
7 years ago
1
Protein Identification Tutorial
#12
xychua
closed
7 years ago
1
Import from URL instructions dont work
#11
tseemann
closed
7 years ago
8
Importing a history - need a file in there first?
#10
AnnaSyme
closed
8 years ago
1
Add screenshot for importing data
#9
tseemann
closed
8 years ago
2
Replace ../foo/index.md with /modules/foo/index.md
#8
tseemann
closed
7 years ago
1
Make the icons macros
#7
tseemann
opened
8 years ago
0
Make light green and black styles
#6
tseemann
opened
8 years ago
0
history icon is an eye icon
#5
tseemann
closed
7 years ago
1
Prokka tutorial - add section on JBrowse
#4
AnnaSyme
closed
8 years ago
0
Save histories for various tutorials
#3
AnnaSyme
closed
8 years ago
1
Update tutorials with new reference genome files?
#2
AnnaSyme
closed
8 years ago
1
FastQC needs screenshots
#1
AnnaSyme
opened
8 years ago
2