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seqan / flexbar

flexible barcode and adapter removal
BSD 3-Clause "New" or "Revised" License
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Segmentation fault 3.01 #10

Closed CDieterich closed 7 years ago

CDieterich commented 7 years ago

Hello, while Flexbar 2.7 works fine: flexbar -r K002000101_56068_1.fq.gz -a Seq_adp_eCLIP.fa -b Seq_barcode_eCLIP.fa -qf sanger -t flexbar27

Flexbar 3.0.1 flexbar_dev -r K002000101_56068_1.fq.gz -a Seq_adp_eCLIP.fa -b Seq_barcode_eCLIP.fa -qf sanger Segmentation fault

crashes

Please look into this.

Seq_barcode_eCLIP.fa

RNA_A01_upstraem_revcomp CTACACGACGCTCTTCCGATCTAAGCAAT RNA_B06_upstream_revcomp CTACACGACGCTCTTCCGATCTGGCTTGT RIL_upstream_revcomp CACGACGCTCTTCCGATCT

and

cDNA_3p_adapter NNNNNAGATCGGAAGAGCACACGTCTGAACTCCAGTCAC

jtroehr commented 7 years ago

This issue is resolved in Flexbar 3.0.2