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seqan / iGenVar

The official repository for the iGenVar project.
BSD 3-Clause "New" or "Revised" License
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FEATURE - Detect tandem duplications with cigar #148

Open Irallia opened 3 years ago

Irallia commented 3 years ago

Resolves #166 With this PR we can now detect tandem duplications in the CIGAR string. We only collect tandem duplications with no errors. In a follow up PR, we will allow errors aswell. Thus I wrote some TODOs in the code.

codecov[bot] commented 3 years ago

Codecov Report

Merging #148 (4a44217) into master (74ddfb5) will decrease coverage by 0.31%. The diff coverage is 94.73%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #148      +/-   ##
==========================================
- Coverage   98.40%   98.09%   -0.32%     
==========================================
  Files          19       19              
  Lines         878      944      +66     
==========================================
+ Hits          864      926      +62     
- Misses         14       18       +4
Impacted Files Coverage Δ
...ules/sv_detection_methods/analyze_cigar_method.cpp 95.83% <94.52%> (-4.17%) :arrow_down:
src/variant_detection/variant_output.cpp 100.00% <100.00%> (ø)

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