seqan / iGenVar

The official repository for the iGenVar project.
BSD 3-Clause "New" or "Revised" License
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Calculate a raw activity profile #152

Closed joergi-w closed 2 years ago

joergi-w commented 3 years ago

Use a reference sequence and aligned reads: Count mismatches, indels and soft clips for each reference position. Transform these into a measure of entropy → activity score.

Result: Wave function of activity per genome position.