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seqan / iGenVar

The official repository for the iGenVar project.
BSD 3-Clause "New" or "Revised" License
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Determine different variants from the haplotypes #155

Open joergi-w opened 3 years ago

joergi-w commented 3 years ago

We skip the base quality score recalibration for now.

Given the haplotype sequences. For each potential variant site: call genotypes and score them conditionally with respect to the haplotype likelihood.

GATK documentation