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seqan / iGenVar

The official repository for the iGenVar project.
BSD 3-Clause "New" or "Revised" License
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Calculate active regions based on Cigar information #171

Closed joergi-w closed 3 years ago

joergi-w commented 3 years ago

I'm using the activity values from a previous PR to calculate the regions of high activity with a sliding window approach. The regions are returned in the format of intervals (i.e. pairs of genome positions).

The first commit adds the new functionality, the second commit structures the already quite long function into smaller, testable functions. The third commit adds API tests in order to satisfy coverage tests. Therefore, it may be easier to review them separately.

Resolves #153.

codecov[bot] commented 3 years ago

Codecov Report

Merging #171 (e180d2a) into master (d14e155) will increase coverage by 0.31%. The diff coverage is 100.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #171      +/-   ##
==========================================
+ Coverage   96.48%   96.80%   +0.31%     
==========================================
  Files          19       19              
  Lines         797      814      +17     
==========================================
+ Hits          769      788      +19     
+ Misses         28       26       -2
Impacted Files Coverage Δ
src/iGenVar.cpp 100.00% <ø> (+1.65%) :arrow_up:
src/variant_detection/snp_indel_detection.cpp 98.48% <100.00%> (+0.92%) :arrow_up:
src/variant_detection/variant_detection.cpp 93.97% <0.00%> (ø)

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