Some of our input files are based on GRCh37 (hg19) others on GRCh38 (hg38). This results in errors when you throw them together.
We want to rely on GRCh38 (hg38) and use a coordinate converter to convert all necessary files.
Alternatively we split the benchmarks into 37 and 38.
Maybe use CrossMap for this & don't forget to change the truth set aswell.
Some of our input files are based on GRCh37 (hg19) others on GRCh38 (hg38). This results in errors when you throw them together. We want to rely on GRCh38 (hg38) and use a coordinate converter to convert all necessary files. Alternatively we split the benchmarks into 37 and 38. Maybe use CrossMap for this & don't forget to change the truth set aswell.