[BENCHMARKS] dataset comparison long read enhancement

[Irallia]

Illumina Mate Pair

all	DUP as INS

Precision	Recall

Illumina Paired End

all	DUP as INS

Precision	Recall

[codecov[bot]]

Codecov Report

Merging #209 (6e47b08) into master (71ad200) will decrease coverage by 0.00%. The diff coverage is n/a.

@@            Coverage Diff             @@
##           master     #209      +/-   ##
==========================================
- Coverage   98.35%   98.34%   -0.01%     
==========================================
  Files          18       18              
  Lines         850      846       -4     
==========================================
- Hits          836      832       -4     
  Misses         14       14              

Impacted Files	Coverage Δ
src/iGenVar.cpp	100.00% <0.00%> (ø)

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[joshuak94]

So it looks like using just long reads still works much better than using both short and long reads combined? Also what is the difference between mate pair and paired-end?

[Irallia]

So it looks like using just long reads still works much better than using both short and long reads combined? Also what is the difference between mate pair and paired-end?

Yes, I had a discussion with Knut today aswell. And yes it just looks like out short read calling is very bad. We need to find out whats wrong there.