Closed Irallia closed 2 years ago
Merging #210 (86f4888) into master (c731471) will increase coverage by
0.04%
. The diff coverage is100.00%
.
@@ Coverage Diff @@
## master #210 +/- ##
==========================================
+ Coverage 98.34% 98.38% +0.04%
==========================================
Files 18 18
Lines 844 867 +23
==========================================
+ Hits 830 853 +23
Misses 14 14
Impacted Files | Coverage Δ | |
---|---|---|
src/iGenVar.cpp | 100.00% <ø> (ø) |
|
...sv_detection_methods/analyze_split_read_method.cpp | 97.34% <100.00%> (+0.50%) |
:arrow_up: |
src/variant_detection/variant_output.cpp | 100.00% <100.00%> (ø) |
Continue to review full report at Codecov.
Legend - Click here to learn more
Δ = absolute <relative> (impact)
,ø = not affected
,? = missing data
Powered by Codecov. Last update c731471...86f4888. Read the comment docs.
For reviewing look at the second commit ;)
This PR adds INVs to the iGenVar repertoir. An Inversion consists of two Breakpoints (start and end of the inv) which we merge into one Inversion junction. I decided also to add the inverted sequence to our junction struct. In the split read method we find the inversions via their different orientation. Later in the variant output, this is hidden, because we merged the two BNDs together. It now looks like a deletion with an inserted sequence.