search

seqan / iGenVar

The official repository for the iGenVar project.
BSD 3-Clause "New" or "Revised" License
9 stars 8 forks source link

[FIX] Remove unnecessary "Number" from ALT header lines #214

Closed Irallia closed 2 years ago

Irallia commented 2 years ago

The picard tool did not accept our vcf. And after a look into the vcf specification I also saw why. The entry Number in the ALT header is unnecessary. -> https://samtools.github.io/hts-specs/VCFv4.3.pdf

codecov[bot] commented 2 years ago

Codecov Report

Merging #214 (816d653) into master (74b763e) will not change coverage. The diff coverage is 100.00%.

@@           Coverage Diff           @@
##           master     #214   +/-   ##
=======================================
  Coverage   98.39%   98.39%           
=======================================
  Files          18       18           
  Lines         871      871           
=======================================
  Hits          857      857           
  Misses         14       14
Impacted Files Coverage Δ
src/variant_detection/variant_output.cpp 100.00% <100.00%> (ø)

Continue to review full report at Codecov.

Legend - Click here to learn more Δ = absolute <relative> (impact), ø = not affected, ? = missing data Powered by Codecov. Last update 74b763e...816d653. Read the comment docs.