Closed Irallia closed 1 year ago
One test fails just for gcc10, I don't know what to do here.
[ RUN ] iGenVar_cli_test.test_genome_input
../../../iGenVar/test/cli/iGenVar_cli_test.cpp:324: Failure
Expected equality of these values:
result.exit_code
Which is: 11
0
unknown file: Failure
C++ exception with description "basic_string::erase: __pos (which is 484) > this->size() (which is 0)" thrown in the test body.
[ FAILED ] iGenVar_cli_test.test_genome_input (12 ms)
Without the sharg change, the cmake change works: https://github.com/seqan/iGenVar/pull/235
Base: 98.47% // Head: 98.31% // Decreases project coverage by -0.16%
:warning:
Coverage data is based on head (
64565eb
) compared to base (1966a1c
). Patch coverage: 96.29% of modified lines in pull request are covered.
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This PR updates SeqAn3 to use the sharg parser. As the b.i.o. lib is using an older version of SeqAn3 I had to change the dependency stuff in the CmakeLists.
Wait for https://github.com/seqan/sharg-parser/pull/111